IQ-TREE multicore version 1.6.11 for Linux 64-bit built Jun  6 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Troglosironidae_4genes.raxml -sp Troglosironidae_4genes.partitions.txt -pre Troglosironidae_4genes.raxml -m TEST -bb 1000 -alrt 1000
Seed:    156315 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Tue Nov 19 03:19:34 2019
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading partition model file Troglosironidae_4genes.partitions.txt ...
Reading alignment file Troglosironidae_4genes.raxml ... Phylip format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 81 sequences with 4943 columns, 1066 distinct patterns
571 parsimony-informative, 325 singleton sites, 4047 constant sites
                                Gap/Ambiguity  Composition  p-value
   1  H_tama_IZ134691                   2.55%    failed      0.00%
   2  M_savannahensis_IZ134557          2.53%    failed      0.00%
   3  O_cameroonensis_IZ132315          2.97%    failed      0.00%
   4  P_gabonica_IZ132297               2.31%    failed      0.00%
   5  T_aelleni_IZ134764                0.20%    failed      0.03%
   6  T_brevifossa_IZ134776            48.98%    failed      0.00%
   7  T_cf_platnicki_IZ134766           0.45%    failed      0.01%
   8  T_cf_platnicki_IZ134786          86.99%    failed      0.00%
   9  T_dogny_IZ151570_1               16.37%    passed     63.41%
  10  T_dogny_IZ151570_2               16.37%    passed     63.41%
  11  T_dogny_IZ51947                  86.77%    failed      0.00%
  12  T_juberthiei_IZ134763f            2.49%    failed      0.01%
  13  T_juberthiei_IZ134763m            1.05%    failed      0.01%
  14  T_juberthiei_IZ134767_1           3.36%    failed      0.00%
  15  T_juberthiei_IZ134767_2          78.56%    failed      0.00%
  16  T_juberthiei_IZ134767_3          86.73%    failed      0.00%
  17  T_juberthiei_IZ134767_4          86.71%    failed      0.00%
  18  T_juberthiei_IZ134767_5          78.52%    failed      0.00%
  19  T_longifossa_IZ134764            86.71%    failed      0.00%
  20  T_longifossa_IZ65208              0.28%    failed      0.00%
  21  T_monteithi_IZ51948               4.77%    failed      0.05%
  22  T_ninqua_IZ134768                 0.77%    failed      0.00%
  23  T_oscitatio_IZ134779F            76.71%    failed      0.81%
  24  T_oscitatio_IZ72572              10.52%    failed      0.00%
  25  T_pin_IZ133854_1                  0.99%    failed      0.01%
  26  T_pin_IZ133854_2                 77.91%    failed      0.00%
  27  T_pin_IZ133874_1                 77.54%    failed      0.00%
  28  T_pin_IZ133874_2                 78.29%    failed      0.00%
  29  T_pin_IZ133875                   55.31%    passed     41.66%
  30  T_pin_IZ133875_2                 77.54%    failed      0.00%
  31  T_pin_IZ133875_4                 77.54%    failed      0.00%
  32  T_pin_IZ133875_5                 90.84%    failed      0.00%
  33  T_pin_IZ133876                   77.54%    failed      0.00%
  34  T_pseudojuberthiei_IZ133855_1     0.55%    failed      0.01%
  35  T_pseudojuberthiei_IZ133855_2    77.54%    failed      0.00%
  36  T_pseudojuberthiei_IZ133855_3    77.54%    failed      0.00%
  37  T_pseudojuberthiei_IZ133856       0.59%    failed      0.01%
  38  T_pseudojuberthiei_IZ133857_1    90.84%    failed      0.00%
  39  T_pseudojuberthiei_IZ133857_2     1.19%    failed      0.01%
  40  T_pseudojuberthiei_IZ133857_3    77.52%    failed      0.00%
  41  T_pseudojuberthiei_IZ133857_4    77.54%    failed      0.00%
  42  T_pseudojuberthiei_IZ133857_5    77.54%    failed      0.00%
  43  T_pseudojuberthiei_IZ133857_6    77.54%    failed      0.00%
  44  T_pseudojuberthiei_IZ133859_1    64.03%    failed      0.00%
  45  T_pseudojuberthiei_IZ133859_10   90.84%    failed      0.00%
  46  T_pseudojuberthiei_IZ133859_2    47.58%    failed      0.00%
  47  T_pseudojuberthiei_IZ133859_3    90.84%    failed      0.00%
  48  T_pseudojuberthiei_IZ133859_4    90.82%    failed      0.00%
  49  T_pseudojuberthiei_IZ133859_7    91.89%    failed      0.00%
  50  T_pseudojuberthiei_IZ133859_9    90.88%    failed      0.00%
  51  T_pseudojuberthiei_IZ133863_7    90.84%    failed      0.00%
  52  T_pseudojuberthiei_IZ133863_8    91.60%    failed      0.00%
  53  T_pseudojuberthiei_IZ133864_4    90.82%    failed      0.00%
  54  T_pseudojuberthiei_IZ133864_6    90.84%    failed      0.00%
  55  T_pseudojuberthiei_IZ133864_7    90.84%    failed      0.00%
  56  T_pseudojuberthiei_IZ133864_8    90.82%    failed      0.00%
  57  T_pseudojuberthiei_IZ133864_9    90.84%    failed      0.00%
  58  T_pseudojuberthiei_IZ133868      86.71%    failed      0.00%
  59  T_pseudojuberthiei_IZ133868_3    90.84%    failed      0.00%
  60  T_pseudojuberthiei_IZ133868_4    90.84%    failed      0.00%
  61  T_pseudojuberthiei_IZ133868_8    92.62%    failed      0.00%
  62  T_pseudojuberthiei_IZ133869      90.84%    failed      0.00%
  63  T_pseudojuberthiei_IZ133870_1    44.24%    failed      0.17%
  64  T_pseudojuberthiei_IZ133870_4    90.84%    failed      0.00%
  65  T_pseudojuberthiei_IZ133870_5    62.65%    failed      0.00%
  66  T_pseudojuberthiei_IZ133871_1    91.44%    failed      0.00%
  67  T_pseudojuberthiei_IZ133871_2    90.84%    failed      0.00%
  68  T_pseudojuberthiei_IZ151618_1    16.33%    passed     70.94%
  69  T_pseudojuberthiei_IZ151618_2    16.33%    passed     68.85%
  70  T_raveni_IZ134777                23.04%    failed      0.00%
  71  T_sharmai_IZ151558_1             16.67%    passed     52.78%
  72  T_sharmai_IZ151558_2             16.31%    passed     64.08%
  73  T_sheari_IZ134772                86.71%    failed      0.00%
  74  T_sheari_IZ72565                 17.70%    failed      0.00%
  75  T_urbanus_IZ134780f              16.14%    failed      0.00%
  76  T_urbanus_IZ134780m               3.97%    failed      0.02%
  77  T_wilsoni_IZ134787                1.66%    failed      0.00%
  78  Troglosiro_sp_IZ134781           64.37%    failed      0.00%
  79  Troglosiro_sp_IZ134782           40.10%    failed      0.00%
  80  Troglosiro_sp_IZ134783           73.19%    failed      0.00%
  81  Troglosiro_sp_IZ134784           73.19%    failed      0.00%
WARNING: 49 sequences contain more than 50% gaps/ambiguity
****  TOTAL                            55.02%  74 sequences failed composition chi2 test (p-value<5%; df=3)

Partition file is not in NEXUS format, assuming RAxML-style partition file...
Subset	Type	Seqs	Sites	Infor	Invar	Model	Name
1	DNA	64	462	171	220	GTR	16S
2	DNA	33	1761	13	1701	GTR	18S
3	DNA	36	2063	106	1813	GTR	28S
4	DNA	54	657	281	313	GTR	COI
Degree of missing data: 0.507
Info: multi-threading strategy over partitions

NOTE: T_dogny_IZ151570_2 is identical to T_dogny_IZ151570_1 but kept for subsequent analysis
NOTE: T_pin_IZ133875_4 is identical to T_pin_IZ133875_2 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133859_10 is identical to T_pseudojuberthiei_IZ133857_1 but kept for subsequent analysis
NOTE: 7 identical sequences (see below) will be ignored for subsequent analysis
NOTE: T_pin_IZ133876 (identical to T_pin_IZ133875_2) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133859_3 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133863_7 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133864_6 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133864_9 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133868_3 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133871_2 (identical to T_pseudojuberthiei_IZ133857_1) is ignored but added at the end
Concatenated alignment was printed to Troglosironidae_4genes.raxml.uniqueseq.phy

For your convenience alignment with unique sequences printed to Troglosironidae_4genes.raxml.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.008 seconds
NOTE: ModelFinder requires 10 MB RAM!
Testing GTR+F+G on supermatrix...
GTR+F+G4 / LnL: -18153.588 / df: 154 / AIC: 36615.177 / AICc: 36625.148 / BIC: 37617.059
Selecting individual models for 4 charsets using BIC...
 No. Model        Score       Charset
   1 TIM2+F+G4    6655.215    16S
   2 TNe+I        6350.971    18S
   3 TVM+F+I+G4   10367.650   28S
   4 GTR+F+I+G4   12758.618   COI
Full partition model BIC score: 36776.447 (LnL: -16793.400  df:375)
Partition information was printed to Troglosironidae_4genes.raxml.best_scheme.nex
Partition information in Raxml format was printed to Troglosironidae_4genes.raxml.best_scheme

All model information printed to Troglosironidae_4genes.raxml.model.gz
CPU time for ModelFinder: 17.428 seconds (0h:0m:17s)
Wall-clock time for ModelFinder: 17.998 seconds (0h:0m:17s)
Generating 1000 samples for ultrafast bootstrap (seed: 156315)...

NOTE: 10 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Optimizing GTR+F+I+G4 parameters for partition COI (113 free parameters)
Optimizing TIM2+F+G4 parameters for partition 16S (118 free parameters)
Optimizing TVM+F+I+G4 parameters for partition 28S (78 free parameters)
Optimizing TNe+I parameters for partition 18S (66 free parameters)
Optimal log-likelihood: -16790.205
Computing ML distances based on estimated model parameters... 0.040 sec
WARNING: Some pairwise ML distances are too long (saturated)
Computing BIONJ tree...
0.074 seconds
Log-likelihood of BIONJ tree: -18740.261
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 1.018 second
Computing log-likelihood of 98 initial trees ... 2.457 seconds
Current best score: -16788.953

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -16775.727
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 3: -16775.261
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 4: -16769.933
Iteration 10 / LogL: -16777.662 / Time: 0h:0m:20s
Iteration 20 / LogL: -16781.219 / Time: 0h:0m:25s
Finish initializing candidate tree set (20)
Current best tree score: -16769.933 / CPU time: 13.564
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -16788.166 / Time: 0h:0m:30s (0h:1m:18s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 31: -16769.786
Iteration 40 / LogL: -16773.232 / Time: 0h:0m:36s (0h:1m:24s left)
Iteration 50 / LogL: -16782.241 / Time: 0h:0m:41s (0h:1m:8s left)
Log-likelihood cutoff on original alignment: -16814.970
BETTER TREE FOUND at iteration 59: -16769.786
Iteration 60 / LogL: -16773.438 / Time: 0h:0m:47s (0h:1m:18s left)
Iteration 70 / LogL: -16770.373 / Time: 0h:0m:52s (0h:1m:7s left)
Iteration 80 / LogL: -16800.276 / Time: 0h:0m:57s (0h:0m:57s left)
BETTER TREE FOUND at iteration 86: -16769.782
Iteration 90 / LogL: -16770.416 / Time: 0h:1m:3s (0h:1m:7s left)
Iteration 100 / LogL: -16770.449 / Time: 0h:1m:8s (0h:0m:59s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.984
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 110 / LogL: -16812.450 / Time: 0h:1m:13s (0h:1m:0s left)
Iteration 120 / LogL: -16773.268 / Time: 0h:1m:18s (0h:0m:52s left)
BETTER TREE FOUND at iteration 124: -16769.773
Iteration 130 / LogL: -16783.493 / Time: 0h:1m:23s (0h:1m:1s left)
Iteration 140 / LogL: -16777.050 / Time: 0h:1m:28s (0h:0m:53s left)
Iteration 150 / LogL: -16779.311 / Time: 0h:1m:34s (0h:0m:46s left)
Log-likelihood cutoff on original alignment: -16806.593
Iteration 160 / LogL: -16769.782 / Time: 0h:1m:39s (0h:0m:39s left)
BETTER TREE FOUND at iteration 164: -16769.772
Iteration 170 / LogL: -16769.781 / Time: 0h:1m:44s (0h:0m:58s left)
Iteration 180 / LogL: -16770.358 / Time: 0h:1m:49s (0h:0m:51s left)
Iteration 190 / LogL: -16770.957 / Time: 0h:1m:55s (0h:0m:45s left)
BETTER TREE FOUND at iteration 192: -16769.770
Iteration 200 / LogL: -16769.939 / Time: 0h:2m:0s (0h:0m:55s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.992
BETTER TREE FOUND at iteration 208: -16769.770
Iteration 210 / LogL: -16779.747 / Time: 0h:2m:6s (0h:0m:59s left)
Iteration 220 / LogL: -16772.768 / Time: 0h:2m:11s (0h:0m:52s left)
BETTER TREE FOUND at iteration 228: -16769.767
Iteration 230 / LogL: -16770.093 / Time: 0h:2m:17s (0h:0m:58s left)
Iteration 240 / LogL: -16779.355 / Time: 0h:2m:22s (0h:0m:52s left)
Iteration 250 / LogL: -16777.380 / Time: 0h:2m:28s (0h:0m:46s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 260 / LogL: -16775.546 / Time: 0h:2m:34s (0h:0m:40s left)
Iteration 270 / LogL: -16772.067 / Time: 0h:2m:39s (0h:0m:34s left)
Iteration 280 / LogL: -16769.785 / Time: 0h:2m:45s (0h:0m:28s left)
Iteration 290 / LogL: -16824.671 / Time: 0h:2m:50s (0h:0m:22s left)
Iteration 300 / LogL: -16778.856 / Time: 0h:2m:55s (0h:0m:16s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.984
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 310 / LogL: -16781.734 / Time: 0h:3m:1s (0h:0m:52s left)
Iteration 320 / LogL: -16772.181 / Time: 0h:3m:7s (0h:0m:46s left)
Iteration 330 / LogL: -16770.989 / Time: 0h:3m:12s (0h:0m:41s left)
Iteration 340 / LogL: -16794.775 / Time: 0h:3m:18s (0h:0m:35s left)
Iteration 350 / LogL: -16784.246 / Time: 0h:3m:24s (0h:0m:29s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 360 / LogL: -16777.849 / Time: 0h:3m:30s (0h:0m:23s left)
Iteration 370 / LogL: -16769.778 / Time: 0h:3m:36s (0h:0m:17s left)
Iteration 380 / LogL: -16781.699 / Time: 0h:3m:41s (0h:0m:11s left)
Iteration 390 / LogL: -16775.366 / Time: 0h:3m:47s (0h:0m:5s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 398: -16768.910
Iteration 400 / LogL: -16770.628 / Time: 0h:3m:52s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.986
NOTE: UFBoot does not converge, continue at least 100 more iterations
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 407: -16766.307
Iteration 410 / LogL: -16767.404 / Time: 0h:3m:59s (0h:0m:56s left)
Iteration 420 / LogL: -16770.640 / Time: 0h:4m:4s (0h:0m:50s left)
Iteration 430 / LogL: -16766.313 / Time: 0h:4m:10s (0h:0m:44s left)
Iteration 440 / LogL: -16766.517 / Time: 0h:4m:16s (0h:0m:39s left)
Iteration 450 / LogL: -16769.973 / Time: 0h:4m:22s (0h:0m:33s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 460 / LogL: -16767.147 / Time: 0h:4m:29s (0h:0m:27s left)
Iteration 470 / LogL: -16766.510 / Time: 0h:4m:34s (0h:0m:21s left)
BETTER TREE FOUND at iteration 474: -16766.307
Iteration 480 / LogL: -16767.156 / Time: 0h:4m:39s (0h:0m:54s left)
BETTER TREE FOUND at iteration 490: -16766.307
Iteration 490 / LogL: -16766.307 / Time: 0h:4m:45s (0h:0m:58s left)
Iteration 500 / LogL: -16766.518 / Time: 0h:4m:51s (0h:0m:52s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.975
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 510 / LogL: -16770.415 / Time: 0h:4m:57s (0h:0m:52s left)
BETTER TREE FOUND at iteration 511: -16766.302
Iteration 520 / LogL: -16769.532 / Time: 0h:5m:2s (0h:0m:53s left)
BETTER TREE FOUND at iteration 522: -16766.298
Iteration 530 / LogL: -16766.511 / Time: 0h:5m:8s (0h:0m:53s left)
Iteration 540 / LogL: -16779.818 / Time: 0h:5m:14s (0h:0m:47s left)
Iteration 550 / LogL: -16767.153 / Time: 0h:5m:19s (0h:0m:41s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 560 / LogL: -16770.360 / Time: 0h:5m:25s (0h:0m:36s left)
Iteration 570 / LogL: -16772.377 / Time: 0h:5m:31s (0h:0m:30s left)
Iteration 580 / LogL: -16773.262 / Time: 0h:5m:37s (0h:0m:24s left)
Iteration 590 / LogL: -16772.584 / Time: 0h:5m:43s (0h:0m:18s left)
Iteration 600 / LogL: -16766.306 / Time: 0h:5m:49s (0h:0m:12s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.972
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 610 / LogL: -16766.926 / Time: 0h:5m:55s (0h:0m:52s left)
BETTER TREE FOUND at iteration 617: -16766.297
Iteration 620 / LogL: -16770.008 / Time: 0h:6m:1s (0h:0m:56s left)
Iteration 630 / LogL: -16775.096 / Time: 0h:6m:7s (0h:0m:50s left)
Iteration 640 / LogL: -16789.560 / Time: 0h:6m:13s (0h:0m:45s left)
Iteration 650 / LogL: -16769.735 / Time: 0h:6m:19s (0h:0m:39s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 660 / LogL: -16794.268 / Time: 0h:6m:26s (0h:0m:33s left)
BETTER TREE FOUND at iteration 664: -16766.296
Iteration 670 / LogL: -16770.005 / Time: 0h:6m:32s (0h:0m:55s left)
Iteration 680 / LogL: -16766.313 / Time: 0h:6m:38s (0h:0m:49s left)
Iteration 690 / LogL: -16767.555 / Time: 0h:6m:44s (0h:0m:43s left)
Iteration 700 / LogL: -16778.303 / Time: 0h:6m:50s (0h:0m:37s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.966
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 710 / LogL: -16766.511 / Time: 0h:6m:57s (0h:0m:53s left)
Iteration 720 / LogL: -16773.568 / Time: 0h:7m:3s (0h:0m:47s left)
Iteration 730 / LogL: -16799.103 / Time: 0h:7m:9s (0h:0m:41s left)
Iteration 740 / LogL: -16783.518 / Time: 0h:7m:16s (0h:0m:35s left)
Iteration 750 / LogL: -16783.696 / Time: 0h:7m:22s (0h:0m:29s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 760 / LogL: -16773.272 / Time: 0h:7m:29s (0h:0m:23s left)
Iteration 770 / LogL: -16800.834 / Time: 0h:7m:35s (0h:0m:17s left)
Iteration 780 / LogL: -16790.371 / Time: 0h:7m:42s (0h:0m:11s left)
Iteration 790 / LogL: -16768.644 / Time: 0h:7m:48s (0h:0m:5s left)
Iteration 800 / LogL: -16766.317 / Time: 0h:7m:54s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.969
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 810 / LogL: -16766.517 / Time: 0h:8m:0s (0h:0m:53s left)
Iteration 820 / LogL: -16766.502 / Time: 0h:8m:6s (0h:0m:47s left)
Iteration 830 / LogL: -16768.657 / Time: 0h:8m:11s (0h:0m:41s left)
Iteration 840 / LogL: -16775.991 / Time: 0h:8m:18s (0h:0m:35s left)
Iteration 850 / LogL: -16773.248 / Time: 0h:8m:24s (0h:0m:29s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 860 / LogL: -16766.514 / Time: 0h:8m:30s (0h:0m:23s left)
Iteration 870 / LogL: -16794.032 / Time: 0h:8m:36s (0h:0m:17s left)
Iteration 880 / LogL: -16767.913 / Time: 0h:8m:42s (0h:0m:11s left)
Iteration 890 / LogL: -16766.511 / Time: 0h:8m:48s (0h:0m:5s left)
Iteration 900 / LogL: -16766.505 / Time: 0h:8m:54s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.981
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 910 / LogL: -16780.234 / Time: 0h:9m:1s (0h:0m:53s left)
Iteration 920 / LogL: -16772.978 / Time: 0h:9m:7s (0h:0m:47s left)
Iteration 930 / LogL: -16768.641 / Time: 0h:9m:13s (0h:0m:41s left)
Iteration 940 / LogL: -16777.357 / Time: 0h:9m:18s (0h:0m:35s left)
Iteration 950 / LogL: -16789.643 / Time: 0h:9m:25s (0h:0m:29s left)
Log-likelihood cutoff on original alignment: -16805.657
Iteration 960 / LogL: -16766.304 / Time: 0h:9m:31s (0h:0m:23s left)
Iteration 970 / LogL: -16766.497 / Time: 0h:9m:37s (0h:0m:17s left)
Iteration 980 / LogL: -16768.631 / Time: 0h:9m:43s (0h:0m:11s left)
Iteration 990 / LogL: -16766.938 / Time: 0h:9m:49s (0h:0m:5s left)
Iteration 1000 / LogL: -16766.306 / Time: 0h:9m:55s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -16805.657
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.982
NOTE: UFBoot does not converge, continue at least 100 more iterations
WARNING: bootstrap analysis did not converge. You should rerun with higher number of iterations (-nm option)
TREE SEARCH COMPLETED AFTER 1001 ITERATIONS / Time: 0h:9m:56s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
Optimizing GTR+F+I+G4 parameters for partition COI (113 free parameters)
Optimizing TIM2+F+G4 parameters for partition 16S (118 free parameters)
Optimizing TVM+F+I+G4 parameters for partition 28S (78 free parameters)
Optimizing TNe+I parameters for partition 18S (66 free parameters)
Optimal log-likelihood: -16766.256
BEST SCORE FOUND : -16766.256

Testing tree branches by SH-like aLRT with 1000 replicates...
6.124 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Troglosironidae_4genes.raxml.splits.nex
Total tree length: 1.531

Total number of iterations: 1001
CPU time used for tree search: 582.340 sec (0h:9m:42s)
Wall-clock time used for tree search: 584.791 sec (0h:9m:44s)
Total CPU time used: 600.528 sec (0h:10m:0s)
Total wall-clock time used: 603.555 sec (0h:10m:3s)

Computing bootstrap consensus tree...
Reading input file Troglosironidae_4genes.raxml.splits.nex...
74 taxa and 1716 splits.
Consensus tree written to Troglosironidae_4genes.raxml.contree
Reading input trees file Troglosironidae_4genes.raxml.contree
Log-likelihood of consensus tree: -16766.498

Analysis results written to: 
  IQ-TREE report:                Troglosironidae_4genes.raxml.iqtree
  Maximum-likelihood tree:       Troglosironidae_4genes.raxml.treefile
  Likelihood distances:          Troglosironidae_4genes.raxml.mldist
  Best partitioning scheme:      Troglosironidae_4genes.raxml.best_scheme.nex
           in RAxML format:      Troglosironidae_4genes.raxml.best_scheme

Ultrafast bootstrap approximation results written to:
  Split support values:          Troglosironidae_4genes.raxml.splits.nex
  Consensus tree:                Troglosironidae_4genes.raxml.contree
  Screen log file:               Troglosironidae_4genes.raxml.log

Date and Time: Tue Nov 19 03:29:56 2019
